diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
new file mode 100644
index 0000000000000000000000000000000000000000..862887e836616cdf71594cf64e6b707d459446cd
--- /dev/null
+++ b/.gitlab-ci.yml
@@ -0,0 +1,8 @@
+before_script:
+ - apt-get update
+
+test-3.4:
+ image: python:3.4
+ script:
+ - pip install -e .
+ - py.test .
diff --git a/wetb/gtsdf/tests/test_gtsdf.py b/wetb/gtsdf/tests/test_gtsdf.py
index 402c22b4e53c8e59a62f75c4a6edc713a3890fb7..541cf073399bc6b44350b311a3f8c469512591f0 100644
--- a/wetb/gtsdf/tests/test_gtsdf.py
+++ b/wetb/gtsdf/tests/test_gtsdf.py
@@ -12,15 +12,20 @@ import unittest
import os
import shutil
+tmp_path = os.path.dirname(__file__) + "/tmp/"
class Test_gsdf(unittest.TestCase):
- f = "tmp/"
def setUp(self):
unittest.TestCase.setUp(self)
- if not os.path.isdir(self.f):
- os.makedirs(self.f)
+ if not os.path.isdir(tmp_path):
+ os.makedirs(tmp_path)
+
+ @classmethod
+ def tearDownClass(cls):
+ super(Test_gsdf, cls).tearDownClass()
+ shutil.rmtree(tmp_path)
def test_minimum_requirements (self):
- fn = self.f + "minimum.hdf5"
+ fn = tmp_path + "minimum.hdf5"
f = h5py.File(fn, "w")
#no type
self.assertRaises(ValueError, gtsdf.load, fn)
@@ -37,35 +42,37 @@ class Test_gsdf(unittest.TestCase):
#no data
self.assertRaises(ValueError, gtsdf.load, fn)
b.create_dataset("data", data=np.empty((0, 0)))
+ f.close()
gtsdf.load(fn)
+
def test_save_no_hdf5_ext(self):
- fn = self.f + "no_hdf5_ext"
+ fn = tmp_path + "no_hdf5_ext"
gtsdf.save(fn, np.arange(12).reshape(4, 3))
_, _, info = gtsdf.load(fn + ".hdf5")
self.assertEqual(info['name'], 'no_hdf5_ext')
def test_load_filename(self):
- fn = self.f + "filename.hdf5"
+ fn = tmp_path + "filename.hdf5"
gtsdf.save(fn, np.arange(12).reshape(4, 3))
_, _, info = gtsdf.load(fn)
self.assertEqual(info['name'], 'filename')
def test_load_fileobject(self):
- fn = self.f + "fileobject.hdf5"
+ fn = tmp_path + "fileobject.hdf5"
gtsdf.save(fn, np.arange(12).reshape(4, 3))
_, _, info = gtsdf.load(fn)
self.assertEqual(info['name'], 'fileobject')
def test_save_wrong_no_attr_info(self):
- fn = self.f + "wrong_no_attr_info.hdf5"
+ fn = tmp_path + "wrong_no_attr_info.hdf5"
self.assertRaises(AssertionError, gtsdf.save, fn, np.arange(12).reshape(4, 3), attribute_names=['Att1'])
self.assertRaises(AssertionError, gtsdf.save, fn, np.arange(12).reshape(4, 3), attribute_units=['s'])
self.assertRaises(AssertionError, gtsdf.save, fn, np.arange(12).reshape(4, 3), attribute_descriptions=['desc'])
def test_info(self):
- fn = self.f + "info.hdf5"
+ fn = tmp_path + "info.hdf5"
gtsdf.save(fn, np.arange(12).reshape(6, 2),
name='datasetname',
description='datasetdescription',
@@ -81,39 +88,39 @@ class Test_gsdf(unittest.TestCase):
self.assertEqual(list(info['attribute_descriptions']), ['d1', 'd2'])
def test_no_time(self):
- fn = self.f + 'time.hdf5'
+ fn = tmp_path + 'time.hdf5'
gtsdf.save(fn, np.arange(12).reshape(6, 2))
time, _, _ = gtsdf.load(fn)
np.testing.assert_array_equal(time, np.arange(6))
def test_int_time(self):
- fn = self.f + 'time.hdf5'
+ fn = tmp_path + 'time.hdf5'
gtsdf.save(fn, np.arange(12).reshape(6, 2), time=range(4, 10))
time, _, _ = gtsdf.load(fn)
np.testing.assert_array_equal(time, range(4, 10))
def test_time_offset(self):
- fn = self.f + 'time.hdf5'
+ fn = tmp_path + 'time.hdf5'
gtsdf.save(fn, np.arange(12).reshape(6, 2), time=range(6), time_start=4)
time, _, _ = gtsdf.load(fn)
np.testing.assert_array_equal(time, range(4, 10))
def test_time_gain_offset(self):
- fn = self.f + 'time.hdf5'
+ fn = tmp_path + 'time.hdf5'
gtsdf.save(fn, np.arange(12).reshape(6, 2), time=range(6), time_step=1 / 4, time_start=4)
time, _, _ = gtsdf.load(fn)
np.testing.assert_array_equal(time, np.arange(4, 5.5, .25))
def test_float_time(self):
- fn = self.f + 'time.hdf5'
+ fn = tmp_path + 'time.hdf5'
gtsdf.save(fn, np.arange(12).reshape(6, 2), time=np.arange(4, 5.5, .25))
time, _, _ = gtsdf.load(fn)
np.testing.assert_array_equal(time, np.arange(4, 5.5, .25))
def test_data(self):
- fn = self.f + 'data.hdf5'
+ fn = tmp_path + 'data.hdf5'
d = np.arange(12).reshape(6, 2)
gtsdf.save(fn, d)
f = h5py.File(fn)
@@ -123,7 +130,7 @@ class Test_gsdf(unittest.TestCase):
np.testing.assert_array_almost_equal(data, np.arange(12).reshape(6, 2), 4)
def test_data_float(self):
- fn = self.f + 'time.hdf5'
+ fn = tmp_path + 'time.hdf5'
d = np.arange(12).reshape(6, 2)
gtsdf.save(fn, d, dtype=np.float32)
f = h5py.File(fn)
@@ -134,7 +141,7 @@ class Test_gsdf(unittest.TestCase):
def test_all(self):
- fn = self.f + "all.hdf5"
+ fn = tmp_path + "all.hdf5"
gtsdf.save(fn, np.arange(12).reshape(6, 2),
name='datasetname',
time=range(6), time_step=1 / 4, time_start=4,
@@ -153,7 +160,7 @@ class Test_gsdf(unittest.TestCase):
np.testing.assert_array_almost_equal(data, np.arange(12).reshape(6, 2), 4)
def test_append(self):
- fn = self.f + 'append.hdf5'
+ fn = tmp_path + 'append.hdf5'
d = np.arange(12, dtype=np.float32).reshape(6, 2)
d[2, 0] = np.nan
gtsdf.save(fn, d)
@@ -166,7 +173,7 @@ class Test_gsdf(unittest.TestCase):
def test_nan_float(self):
- fn = self.f + 'nan.hdf5'
+ fn = tmp_path + 'nan.hdf5'
d = np.arange(12, dtype=np.float32).reshape(6, 2)
d[2, 0] = np.nan
gtsdf.save(fn, d)
@@ -176,7 +183,7 @@ class Test_gsdf(unittest.TestCase):
def test_outlier(self):
- fn = self.f + 'outlier.hdf5'
+ fn = tmp_path + 'outlier.hdf5'
d = np.arange(12, dtype=np.float32).reshape(6, 2)
d[2, 0] = 10 ** 4
d[3, 1] = 10 ** 4
@@ -184,14 +191,14 @@ class Test_gsdf(unittest.TestCase):
_, data, _ = gtsdf.load(fn)
def test_inf(self):
- fn = self.f + 'outlier.hdf5'
+ fn = tmp_path + 'outlier.hdf5'
d = np.arange(12, dtype=np.float32).reshape(6, 2)
d[2, 0] = np.inf
d[3, 1] = 10 ** 3
self.assertRaises(ValueError, gtsdf.save, fn, d)
def test_loadpandas(self):
- fn = self.f + "all.hdf5"
+ fn = tmp_path + "all.hdf5"
gtsdf.save(fn, np.arange(12).reshape(6, 2),
name='datasetname',
time=range(6), time_step=1 / 4, time_start=4,