From eb2633d7f12086a39856e4414258b62609f9b7dc Mon Sep 17 00:00:00 2001
From: dave <dave@dtu.dk>
Date: Mon, 1 Aug 2016 15:37:07 +0200
Subject: [PATCH] prepost.Simulations: browse to correct path for hard-linking
turbs, take2
---
wetb/prepost/Simulations.py | 7 ++-----
1 file changed, 2 insertions(+), 5 deletions(-)
diff --git a/wetb/prepost/Simulations.py b/wetb/prepost/Simulations.py
index 145fac01..4f48e23e 100755
--- a/wetb/prepost/Simulations.py
+++ b/wetb/prepost/Simulations.py
@@ -1188,9 +1188,6 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20,
# =====================================================================
# browse back to the scratch directory
pbs += '\necho "%s"\n' % ('-'*70)
- pbs += 'cd %s\n' % pbase
- pbs += "echo 'current working directory:'\n"
- pbs += 'pwd\n'
pbs += 'echo "unzip chunk, create dirs in cpu and sim_id folders"\n'
# unzip chunk, this contains all relevant folders already, and also
# contains files defined in [copyto_files]
@@ -1201,12 +1198,12 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20,
# create hard links for all the turbulence files
turb_dir_base = os.path.join(os.path.commonpath(list(turb_dirs)), '')
pbs += '\necho "%s"\n' % ('-'*70)
- pbs += 'cd %s\n' % os.path.join(pbase, sim_id, '')
+ pbs += 'cd %s\n' % pbase
pbs += "echo 'current working directory:'\n"
pbs += 'pwd\n'
pbs += 'echo "hard-linking all turb files into CPU dirs"\n'
for k in range(ppn):
- rpl = (turb_dir_base, k)
+ rpl = (os.path.join(sim_id, turb_dir_base), k)
pbs += 'find %s -iname *.bin -exec ln {} %s/{}\n' % rpl
# =====================================================================
--
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