From 21234a61cdbe04be0d0982c44c7cf7df48cfd56c Mon Sep 17 00:00:00 2001
From: "Mads M. Pedersen" <mmpe@dtu.dk>
Date: Thu, 4 May 2017 11:40:04 +0200
Subject: [PATCH] flex io
---
wetb/flex/__init__.py | 6 +
wetb/flex/_io.py | 159 ++++++++++++++++++
wetb/flex/tests/__init__.py | 0
wetb/flex/tests/test_files/test1/sensor | 9 +
wetb/flex/tests/test_files/test1/test.int | Bin 0 -> 11352 bytes
.../tests/test_files/test_sensor_info/sensor | 69 ++++++++
wetb/flex/tests/test_flex_io.py | 27 +++
wetb/flex/tests/test_sensor.py | 26 +++
8 files changed, 296 insertions(+)
create mode 100644 wetb/flex/__init__.py
create mode 100644 wetb/flex/_io.py
create mode 100644 wetb/flex/tests/__init__.py
create mode 100644 wetb/flex/tests/test_files/test1/sensor
create mode 100644 wetb/flex/tests/test_files/test1/test.int
create mode 100644 wetb/flex/tests/test_files/test_sensor_info/sensor
create mode 100644 wetb/flex/tests/test_flex_io.py
create mode 100644 wetb/flex/tests/test_sensor.py
diff --git a/wetb/flex/__init__.py b/wetb/flex/__init__.py
new file mode 100644
index 0000000..4d88eaf
--- /dev/null
+++ b/wetb/flex/__init__.py
@@ -0,0 +1,6 @@
+from ._io import load, read_sensor_info
+from wetb import gtsdf
+
+class Dataset(gtsdf.Dataset):
+ def __init__(self, filename):
+ self.time, self.data, self.info = load(filename)
\ No newline at end of file
diff --git a/wetb/flex/_io.py b/wetb/flex/_io.py
new file mode 100644
index 0000000..d3e4e3e
--- /dev/null
+++ b/wetb/flex/_io.py
@@ -0,0 +1,159 @@
+'''
+Created on 11. apr. 2017
+
+@author: mmpe
+'''
+import struct
+import numpy as np
+import os
+
+def load(filename, dtype=np.float):
+ if isinstance(filename, str):
+ fid = open(filename,'rb')
+ elif hasattr(filename, "name"):
+ fid = filename
+ filename = fid.name
+ try:
+ _ = struct.unpack('i', fid.read(4))
+ _ = struct.unpack('i', fid.read(4))
+ title = fid.read(60).strip()
+
+ _ = struct.unpack('i', fid.read(4))
+ _ = struct.unpack('i', fid.read(4))
+ no_sensors = struct.unpack('i', fid.read(4))[0]
+
+ sensor_numbers = [struct.unpack('i', fid.read(4))[0] for _ in range(no_sensors)]
+ _ = struct.unpack('i', fid.read(4))
+ _ = struct.unpack('i', fid.read(4))
+ time_start = struct.unpack('f', fid.read(4))[0]
+ time_step = struct.unpack('f', fid.read(4))[0]
+ scale_factors = np.array([struct.unpack('f', fid.read(4))[0] for _ in range(no_sensors)], dtype=np.double)
+ data = np.fromstring(fid.read(), 'int16').astype(dtype)
+ finally:
+ fid.close()
+
+# if title.isalnum():
+# self.set_info(title, "", self.filename)
+# else:
+# self.set_info(os.path.basename(self.name), "", self.name)
+ try:
+ data = data.reshape(len(data) // no_sensors, no_sensors)
+ except ValueError:
+ raise ValueError("The number of data values (%d) is not divisible by the number of sensors (%d)" % (len(data), no_sensors))
+
+ for i in range(data.shape[1]):
+ data[:, i] *= scale_factors[i]
+ no_scans = data.shape[0]
+
+
+ # Load sensor file if exists
+
+
+ sensor_filename = os.path.join(os.path.dirname(filename), "sensor")
+ sensor_info = {info[0]:info[1:] for info in read_sensor_info(sensor_filename) }
+
+ # set gain and offset for "Time"
+ gains = []
+ offsets = []
+ names, units, descriptions = [], [], []
+
+ for sensor_nr in sensor_numbers:
+
+ name, unit, description, gain, offset = sensor_info.get(sensor_nr, ["Attribute %d"%sensor_nr, '-','',1,0])
+ if sensor_nr==1 and name=="Time" and unit=="s":
+ data = data[:,1:]
+ continue
+ names.append(name)
+ units.append(unit)
+ descriptions.append(description)
+ gains.append(gain)
+ offsets.append(offset)
+
+ time = np.arange(time_start, time_start + data.shape[0] * time_step, time_step).reshape((no_scans, 1))
+ #data = np.concatenate((time, data), axis=1)
+ #gains = np.r_[1,gains]
+ #offsets = np.r_[0,offsets]
+ # self[:]*=self.gains
+ # self[:]+=self.offsets
+ info = {"name": title,
+ "description": filename,
+ "attribute_names": names,
+ "attribute_units": units,
+ "attribute_descriptions": descriptions}
+ return time, data, info
+
+
+def read_sensor_info(sensor_file):
+
+ if hasattr(sensor_file, 'readlines'):
+ sensor_info_lines = sensor_file.readlines()[2:]
+ else:
+ with open(sensor_file, encoding="utf-8") as fid:
+ sensor_info_lines = fid.readlines()[2:]
+ sensor_info = []
+ for line in sensor_info_lines:
+ # while " " in line:
+ # line = line.replace(" "," ")
+ line = line.strip().split()
+ nr = int(line[0])
+ gain = float(line[1])
+ offset = float(line[2])
+ unit = line[5]
+ name_desc = " ".join(line[6:])
+ name = name_desc[:8].split()[0]
+ description = name_desc[8:]
+# name = line[6]
+# description = " ".join(line[7:])
+
+
+ sensor_info.append((nr, name, unit, description, gain, offset))
+ return sensor_info
+
+# def save(dataset, filename):
+# ds = dataset
+# # Write int data file
+# f = open(filename, 'wb')
+# time_att = ds.basis_attribute()
+# sensors = [s for s in ds.attributes() if s is not time_att]
+#
+# if isinstance(ds, FLEX4Dataset):
+# data = ds[:] # (ds[:]-ds.offsets)/ds.gains
+# else:
+# data = ds[:]
+# if time_att.index != -1: # time_att may be "Index" with index=-1 if "Time" not exists
+# data = np.delete(data, time_att.index, axis=1)
+# f.write(struct.pack('ii', 0, 0)) # 2x empty int
+# title = ("%-60s" % str(ds.name)).encode()
+# f.write(struct.pack('60s', title)) # title
+# f.write(struct.pack('ii', 0, 0)) # 2x empty int
+# ns = len(sensors)
+# f.write(struct.pack('i', ns))
+# f.write(struct.pack('i' * ns, *range(1, ns + 1))) # sensor number
+# f.write(struct.pack('ii', 0, 0)) # 2x empty int
+# time = ds.basis_attribute()
+# f.write(struct.pack('ff', time[0], time[1] - time[0])) # start time and time step
+#
+# scale_factors = np.max(np.abs(data), 0) / 32000
+# f.write(struct.pack('f' * len(scale_factors), *scale_factors))
+# # avoid dividing by zero
+# not0 = np.where(scale_factors != 0)
+# data[:, not0] /= scale_factors[not0]
+# #flatten and round
+# data = np.round(data.flatten()).astype(np.int16)
+# f.write(struct.pack('h' * len(data), *data.tolist()))
+# f.close()
+#
+# # write sensor file
+# f = open(os.path.join(os.path.dirname(filename), 'sensor'), 'w')
+# f.write("Sensor list for %s\n" % filename)
+# f.write(" No forst offset korr. c Volt Unit Navn Beskrivelse------------\n")
+# sensorlineformat = "%3s %.3f %.3f 1.00 0.00 %7s %-8s %s\n"
+#
+# if isinstance(ds, FLEX4Dataset):
+# gains = np.r_[ds.gains[1:], np.ones(ds.shape[1] - len(ds.gains))]
+# offsets = np.r_[ds.offsets[1:], np.zeros(ds.shape[1] - len(ds.offsets))]
+# sensorlines = [sensorlineformat % ((nr + 1), gain, offset, att.unit[:7], att.name.replace(" ", "_")[:8], att.description[:512]) for nr, att, gain, offset in zip(range(ns), sensors, gains, offsets)]
+# else:
+# sensorlines = [sensorlineformat % ((nr + 1), 1, 0, att.unit[:7], att.name.replace(" ", "_")[:8], att.description[:512]) for nr, att in enumerate(sensors)]
+# f.writelines(sensorlines)
+# f.close()
\ No newline at end of file
diff --git a/wetb/flex/tests/__init__.py b/wetb/flex/tests/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/wetb/flex/tests/test_files/test1/sensor b/wetb/flex/tests/test_files/test1/sensor
new file mode 100644
index 0000000..88e89f6
--- /dev/null
+++ b/wetb/flex/tests/test_files/test1/sensor
@@ -0,0 +1,9 @@
+Sensor list for C:/mmpe/programming/python/WindEnergyToolbox/wetb/flex/tests/test_files/test1/test.int
+ No forst offset korr. c Volt Unit Navn Beskrivelse------------
+ 1 1.000 0.000 1.00 0.00 m/s WSP_gl._ Free wind speed Vy, gl. coo, of gl. pos 0.75, 0.00, -40.75
+ 2 1.000 0.000 1.00 0.00 m/s WSP_gl._ Free wind speed Vy, gl. coo, of gl. pos 1.00, 0.00, -39.00
+ 3 1.000 0.000 1.00 0.00 m/s WSP_gl._ Free wind speed Vy, gl. coo, of gl. pos 7.00, 0.00, -33.00
+ 4 1.000 0.000 1.00 0.00 rad/s Omega Rotor speed
+ 5 1.000 0.000 1.00 0.00 m Ae_pos_x Aero position x of blade 1 at radius 20.50, global coo.
+ 6 1.000 0.000 1.00 0.00 m Ae_pos_y Aero position y of blade 1 at radius 20.50, global coo.
+ 7 1.000 0.000 1.00 0.00 m Ae_pos_z Aero position z of blade 1 at radius 20.50, global coo.
diff --git a/wetb/flex/tests/test_files/test1/test.int b/wetb/flex/tests/test_files/test1/test.int
new file mode 100644
index 0000000000000000000000000000000000000000..5df18a5d5b28c9b45ec0b48786925a5fb7d9a306
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diff --git a/wetb/flex/tests/test_files/test_sensor_info/sensor b/wetb/flex/tests/test_files/test_sensor_info/sensor
new file mode 100644
index 0000000..593044b
--- /dev/null
+++ b/wetb/flex/tests/test_files/test_sensor_info/sensor
@@ -0,0 +1,69 @@
+ Version ID : HAWC2MB 12.3 (beta -rev_TJ6)
+ No forst offset korr. c Volt Unit Navn Beskrivelse---------------
+ 1 1.0 0.0 0.00 1.0 s Time Time
+ 2 1.0 0.0 0.00 1.0 deg bea1 an shaft_rot angle
+ 3 1.0 0.0 0.00 1.0 rpm bea1 an shaft_rot angle speed
+ 4 1.0 0.0 0.00 1.0 deg bea2 an pitch1 angle
+ 5 1.0 0.0 0.00 1.0 deg/s bea2 an pitch1 angle speed
+ 6 1.0 0.0 0.00 1.0 deg bea2 an pitch2 angle
+ 7 1.0 0.0 0.00 1.0 deg/s bea2 an pitch2 angle speed
+ 8 1.0 0.0 0.00 1.0 deg bea2 an pitch3 angle
+ 9 1.0 0.0 0.00 1.0 deg/s bea2 an pitch3 angle speed
+ 10 1.0 0.0 0.00 1.0 kNm Mx coo: MomentMx Mbdy:towertop nodenr: 1 coo: tower tower top -1: below top mass
+ 11 1.0 0.0 0.00 1.0 kNm My coo: MomentMy Mbdy:towertop nodenr: 1 coo: tower tower top -1: below top mass
+ 12 1.0 0.0 0.00 1.0 kNm Mz coo: MomentMz Mbdy:towertop nodenr: 1 coo: tower tower top -1: below top mass
+ 13 1.0 0.0 0.00 1.0 kN Fx coo: Force Fx Mbdy:towertop nodenr: 1 coo: tower tower top -1: below top mass
+ 14 1.0 0.0 0.00 1.0 kN Fy coo: Force Fy Mbdy:towertop nodenr: 1 coo: tower tower top -1: below top mass
+ 15 1.0 0.0 0.00 1.0 kN Fz coo: Force Fz Mbdy:towertop nodenr: 1 coo: tower tower top -1: below top mass
+ 16 1.0 0.0 0.00 1.0 kNm Mx coo: MomentMx Mbdy:tower nodenr: 1 coo: tower tower base flange
+ 17 1.0 0.0 0.00 1.0 kNm My coo: MomentMy Mbdy:tower nodenr: 1 coo: tower tower base flange
+ 18 1.0 0.0 0.00 1.0 kNm Mz coo: MomentMz Mbdy:tower nodenr: 1 coo: tower tower base flange
+ 19 1.0 0.0 0.00 1.0 kNm Mx coo: MomentMx Mbdy:towertop nodenr: 2 coo: towertop yaw bearing
+ 20 1.0 0.0 0.00 1.0 kNm My coo: MomentMy Mbdy:towertop nodenr: 2 coo: towertop yaw bearing
+ 21 1.0 0.0 0.00 1.0 kNm Mz coo: MomentMz Mbdy:towertop nodenr: 2 coo: towertop yaw bearing
+ 22 1.0 0.0 0.00 1.0 kN Fx coo: Force Fx Mbdy:towertop nodenr: 2 coo: towertop yaw bering
+ 23 1.0 0.0 0.00 1.0 kN Fy coo: Force Fy Mbdy:towertop nodenr: 2 coo: towertop yaw bering
+ 24 1.0 0.0 0.00 1.0 kN Fz coo: Force Fz Mbdy:towertop nodenr: 2 coo: towertop yaw bering
+ 25 1.0 0.0 0.00 1.0 kNm Mx coo: MomentMx Mbdy:shaft nodenr: 4 coo: shaft main bearing
+ 26 1.0 0.0 0.00 1.0 kNm My coo: MomentMy Mbdy:shaft nodenr: 4 coo: shaft main bearing
+ 27 1.0 0.0 0.00 1.0 kNm Mz coo: MomentMz Mbdy:shaft nodenr: 4 coo: shaft main bearing
+ 28 1.0 0.0 0.00 1.0 kNm Mx coo: MomentMx Mbdy:blade1 nodenr: 3 coo: blade1 blade 1 root
+ 29 1.0 0.0 0.00 1.0 kNm My coo: MomentMy Mbdy:blade1 nodenr: 3 coo: blade1 blade 1 root
+ 30 1.0 0.0 0.00 1.0 kNm Mz coo: MomentMz Mbdy:blade1 nodenr: 3 coo: blade1 blade 1 root
+ 31 1.0 0.0 0.00 1.0 kNm Mx coo: MomentMx Mbdy:blade1 nodenr: 10 coo: local blade 1 50% local e coo
+ 32 1.0 0.0 0.00 1.0 kNm My coo: MomentMy Mbdy:blade1 nodenr: 10 coo: local blade 1 50% local e coo
+ 33 1.0 0.0 0.00 1.0 kNm Mz coo: MomentMz Mbdy:blade1 nodenr: 10 coo: local blade 1 50% local e coo
+ 34 1.0 0.0 0.00 1.0 kN Fx coo: Force Fx Mbdy:blade1 nodenr: 1 coo: blade1 blade 1 root
+ 35 1.0 0.0 0.00 1.0 kN Fy coo: Force Fy Mbdy:blade1 nodenr: 1 coo: blade1 blade 1 root
+ 36 1.0 0.0 0.00 1.0 kN Fz coo: Force Fz Mbdy:blade1 nodenr: 1 coo: blade1 blade 1 root
+ 37 1.0 0.0 0.00 1.0 kNm Mx coo: MomentMx Mbdy:blade2 nodenr: 1 coo: blade2 blade 2 root
+ 38 1.0 0.0 0.00 1.0 kNm My coo: MomentMy Mbdy:blade2 nodenr: 1 coo: blade2 blade 2 root
+ 39 1.0 0.0 0.00 1.0 kNm Mz coo: MomentMz Mbdy:blade2 nodenr: 1 coo: blade2 blade 2 root
+ 40 1.0 0.0 0.00 1.0 kNm Mx coo: MomentMx Mbdy:blade3 nodenr: 1 coo: blade3 blade 3 root
+ 41 1.0 0.0 0.00 1.0 kNm My coo: MomentMy Mbdy:blade3 nodenr: 1 coo: blade3 blade 3 root
+ 42 1.0 0.0 0.00 1.0 kNm Mz coo: MomentMz Mbdy:blade3 nodenr: 1 coo: blade3 blade 3 root
+ 43 1.0 0.0 0.00 1.0 m State p State pos x Mbdy:towertop E-nr: 1 Z-rel:1.00 coo: global tower top flange position
+ 44 1.0 0.0 0.00 1.0 m State p State pos y Mbdy:towertop E-nr: 1 Z-rel:1.00 coo: global tower top flange position
+ 45 1.0 0.0 0.00 1.0 m State p State pos z Mbdy:towertop E-nr: 1 Z-rel:1.00 coo: global tower top flange position
+ 46 1.0 0.0 0.00 1.0 m State p State pos x Mbdy:blade1 E-nr: 18 Z-rel:1.00 coo: blade1 blade 1 tip pos
+ 47 1.0 0.0 0.00 1.0 m State p State pos y Mbdy:blade1 E-nr: 18 Z-rel:1.00 coo: blade1 blade 1 tip pos
+ 48 1.0 0.0 0.00 1.0 m State p State pos z Mbdy:blade1 E-nr: 18 Z-rel:1.00 coo: blade1 blade 1 tip pos
+ 49 1.0 0.0 0.00 1.0 m State p State pos x Mbdy:blade2 E-nr: 18 Z-rel:1.00 coo: blade2 blade 2 tip pos
+ 50 1.0 0.0 0.00 1.0 m State p State pos y Mbdy:blade2 E-nr: 18 Z-rel:1.00 coo: blade2 blade 2 tip pos
+ 51 1.0 0.0 0.00 1.0 m State p State pos z Mbdy:blade2 E-nr: 18 Z-rel:1.00 coo: blade2 blade 2 tip pos
+ 52 1.0 0.0 0.00 1.0 m State p State pos x Mbdy:blade3 E-nr: 18 Z-rel:1.00 coo: blade3 blade 3 tip pos
+ 53 1.0 0.0 0.00 1.0 m State p State pos y Mbdy:blade3 E-nr: 18 Z-rel:1.00 coo: blade3 blade 3 tip pos
+ 54 1.0 0.0 0.00 1.0 m State p State pos z Mbdy:blade3 E-nr: 18 Z-rel:1.00 coo: blade3 blade 3 tip pos
+ 55 1.0 0.0 0.00 1.0 m State p State pos x Mbdy:blade1 E-nr: 18 Z-rel:1.00 coo: global blade 1 tip pos
+ 56 1.0 0.0 0.00 1.0 m State p State pos y Mbdy:blade1 E-nr: 18 Z-rel:1.00 coo: global blade 1 tip pos
+ 57 1.0 0.0 0.00 1.0 m State p State pos z Mbdy:blade1 E-nr: 18 Z-rel:1.00 coo: global blade 1 tip pos
+ 58 1.0 0.0 0.00 1.0 m State p State pos x Mbdy:blade1 E-nr: 18 Z-rel:1.00 coo: hub1 blade 1 tip pos hub coo
+ 59 1.0 0.0 0.00 1.0 m State p State pos y Mbdy:blade1 E-nr: 18 Z-rel:1.00 coo: hub1 blade 1 tip pos hub coo
+ 60 1.0 0.0 0.00 1.0 m State p State pos z Mbdy:blade1 E-nr: 18 Z-rel:1.00 coo: hub1 blade 1 tip pos hub coo
+ 61 1.0 0.0 0.00 1.0 m State p State pos x Mbdy:blade2 E-nr: 18 Z-rel:1.00 coo: hub2 blade 2 tip pos hub coo
+ 62 1.0 0.0 0.00 1.0 m State p State pos y Mbdy:blade2 E-nr: 18 Z-rel:1.00 coo: hub2 blade 2 tip pos hub coo
+ 63 1.0 0.0 0.00 1.0 m State p State pos z Mbdy:blade2 E-nr: 18 Z-rel:1.00 coo: hub2 blade 2 tip pos hub coo
+ 64 1.0 0.0 0.00 1.0 m State p State pos x Mbdy:blade3 E-nr: 18 Z-rel:1.00 coo: hub3 blade 3 tip pos hub coo
+ 65 1.0 0.0 0.00 1.0 m State p State pos y Mbdy:blade3 E-nr: 18 Z-rel:1.00 coo: hub3 blade 3 tip pos hub coo
+ 66 1.0 0.0 0.00 1.0 m State p State pos z Mbdy:blade3 E-nr: 18 Z-rel:1.00 coo: hub3 blade 3 tip pos hub coo
+ 67 1.0 0.0 0.00 1.0 rad/s omega t State_rot omega tz Mbdy:shaft E-nr: 4 Z-rel:1.00 coo: shaft
diff --git a/wetb/flex/tests/test_flex_io.py b/wetb/flex/tests/test_flex_io.py
new file mode 100644
index 0000000..85aff61
--- /dev/null
+++ b/wetb/flex/tests/test_flex_io.py
@@ -0,0 +1,27 @@
+'''
+Created on 11. apr. 2017
+
+@author: mmpe
+'''
+import os
+import unittest
+from wetb import flex
+
+
+tfp = os.path.join(os.path.dirname(__file__), 'test_files/') # test file path
+class Test(unittest.TestCase):
+
+
+ def test_load(self):
+ time, data, info = flex.load(tfp+"test1/test.int")
+ self.assertEqual(data.shape, (800,7))
+ self.assertEqual(info['attribute_names'][1], "WSP_gl._")
+ self.assertEqual(info['attribute_units'][1], "m/s")
+ self.assertEqual(info['attribute_descriptions'][1], " Free wind speed Vy, gl. coo, of gl. pos 0.75, 0.00, -40.75")
+
+ self.assertAlmostEqual(data[0, 1], 12.037,3)
+
+
+if __name__ == "__main__":
+ #import sys;sys.argv = ['', 'Test.testName']
+ unittest.main()
\ No newline at end of file
diff --git a/wetb/flex/tests/test_sensor.py b/wetb/flex/tests/test_sensor.py
new file mode 100644
index 0000000..3a88479
--- /dev/null
+++ b/wetb/flex/tests/test_sensor.py
@@ -0,0 +1,26 @@
+'''
+Created on 9. sep. 2016
+
+@author: mmpe
+'''
+import os
+import unittest
+from wetb.flex import read_sensor_info
+
+
+tfp = os.path.join(os.path.dirname(__file__), 'test_files/') # test file path
+class Test(unittest.TestCase):
+
+
+ def test_sensor_load(self):
+ sensor_info = read_sensor_info(tfp + "test_sensor_info/sensor")
+ nr, name, unit, description, _, _ = sensor_info[17]
+ self.assertEqual(nr, 18)
+ self.assertEqual(name, "Mz coo: ")
+ self.assertEqual(unit, "kNm")
+ self.assertEqual(description, "MomentMz Mbdy:tower nodenr: 1 coo: tower tower base flange")
+
+
+if __name__ == "__main__":
+ #import sys;sys.argv = ['', 'Test.test_sensor_load']
+ unittest.main()
--
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