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wtlib
WindEnergyToolbox
Commits
ec04ca6d
Commit
ec04ca6d
authored
6 years ago
by
David Verelst
Browse files
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prepost: add wine 64bit support to zipchunks
parent
4a8c77d7
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Changes
2
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2 changed files
wetb/prepost/dlctemplate.py
+2
-2
2 additions, 2 deletions
wetb/prepost/dlctemplate.py
wetb/prepost/simchunks.py
+9
-4
9 additions, 4 deletions
wetb/prepost/simchunks.py
with
11 additions
and
6 deletions
wetb/prepost/dlctemplate.py
+
2
−
2
View file @
ec04ca6d
...
@@ -348,11 +348,11 @@ def launch_dlcs_excel(sim_id, silent=False, verbose=False, pbs_turb=False,
...
@@ -348,11 +348,11 @@ def launch_dlcs_excel(sim_id, silent=False, verbose=False, pbs_turb=False,
create_chunks_htc_pbs
(
cases
,
sort_by_values
=
sorts_on
,
ppn
=
20
,
create_chunks_htc_pbs
(
cases
,
sort_by_values
=
sorts_on
,
ppn
=
20
,
nr_procs_series
=
3
,
walltime
=
'
20:00:00
'
,
nr_procs_series
=
3
,
walltime
=
'
20:00:00
'
,
chunks_dir
=
'
zip-chunks-jess
'
,
compress
=
compress
,
chunks_dir
=
'
zip-chunks-jess
'
,
compress
=
compress
,
queue
=
'
workq
'
)
queue
=
'
workq
'
,
wine_64bit
=
wine_64bit
)
create_chunks_htc_pbs
(
cases
,
sort_by_values
=
sorts_on
,
ppn
=
12
,
create_chunks_htc_pbs
(
cases
,
sort_by_values
=
sorts_on
,
ppn
=
12
,
nr_procs_series
=
3
,
walltime
=
'
20:00:00
'
,
nr_procs_series
=
3
,
walltime
=
'
20:00:00
'
,
chunks_dir
=
'
zip-chunks-gorm
'
,
compress
=
compress
,
chunks_dir
=
'
zip-chunks-gorm
'
,
compress
=
compress
,
queue
=
'
workq
'
)
queue
=
'
workq
'
,
wine_64bit
=
wine_64bit
)
df
=
sim
.
Cases
(
cases
).
cases2df
()
df
=
sim
.
Cases
(
cases
).
cases2df
()
df
.
to_excel
(
os
.
path
.
join
(
POST_DIR
,
sim_id
+
'
.xls
'
))
df
.
to_excel
(
os
.
path
.
join
(
POST_DIR
,
sim_id
+
'
.xls
'
))
...
...
This diff is collapsed.
Click to expand it.
wetb/prepost/simchunks.py
+
9
−
4
View file @
ec04ca6d
...
@@ -37,7 +37,7 @@ from wetb.prepost.Simulations import Cases
...
@@ -37,7 +37,7 @@ from wetb.prepost.Simulations import Cases
def
create_chunks_htc_pbs
(
cases
,
sort_by_values
=
[
'
[Windspeed]
'
],
ppn
=
20
,
i0
=
0
,
def
create_chunks_htc_pbs
(
cases
,
sort_by_values
=
[
'
[Windspeed]
'
],
ppn
=
20
,
i0
=
0
,
nr_procs_series
=
9
,
queue
=
'
workq
'
,
pyenv
=
'
wetb_py3
'
,
nr_procs_series
=
9
,
queue
=
'
workq
'
,
pyenv
=
'
wetb_py3
'
,
walltime
=
'
24:00:00
'
,
chunks_dir
=
'
zip-chunks-jess
'
,
walltime
=
'
24:00:00
'
,
chunks_dir
=
'
zip-chunks-jess
'
,
compress
=
False
):
compress
=
False
,
wine_64bit
=
False
):
"""
Group a large number of simulations htc and pbs launch scripts into
"""
Group a large number of simulations htc and pbs launch scripts into
different zip files so we can run them with find+xargs on various nodes.
different zip files so we can run them with find+xargs on various nodes.
"""
"""
...
@@ -147,7 +147,8 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20, i0=0,
...
@@ -147,7 +147,8 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20, i0=0,
"""
"""
def
make_pbs_chunks
(
df
,
ii
,
sim_id
,
run_dir
,
model_zip
,
compress
=
False
):
def
make_pbs_chunks
(
df
,
ii
,
sim_id
,
run_dir
,
model_zip
,
compress
=
False
,
wine_64bit
=
False
):
"""
Create a PBS that:
"""
Create a PBS that:
* copies all required files (zip chunk) to scratch disk
* copies all required files (zip chunk) to scratch disk
* copies all required turbulence files to scratch disk
* copies all required turbulence files to scratch disk
...
@@ -159,6 +160,10 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20, i0=0,
...
@@ -159,6 +160,10 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20, i0=0,
cmd_xargs
=
'
/home/MET/sysalt/bin/xargs
'
cmd_xargs
=
'
/home/MET/sysalt/bin/xargs
'
jobid
=
'
%s_chnk_%05i
'
%
(
sim_id
,
ii
)
jobid
=
'
%s_chnk_%05i
'
%
(
sim_id
,
ii
)
wineparam
=
(
'
win32
'
,
'
~/.wine32
'
)
if
wine_64bit
:
wineparam
=
(
'
win64
'
,
'
~/.wine
'
)
pbase
=
os
.
path
.
join
(
'
/scratch
'
,
'
$USER
'
,
'
$PBS_JOBID
'
,
''
)
pbase
=
os
.
path
.
join
(
'
/scratch
'
,
'
$USER
'
,
'
$PBS_JOBID
'
,
''
)
post_dir_base
=
post_dir
.
split
(
sim_id
)[
1
]
post_dir_base
=
post_dir
.
split
(
sim_id
)[
1
]
if
post_dir_base
[
0
]
==
os
.
path
.
sep
:
if
post_dir_base
[
0
]
==
os
.
path
.
sep
:
...
@@ -287,7 +292,7 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20, i0=0,
...
@@ -287,7 +292,7 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20, i0=0,
pbs
+=
"
echo
'
current working directory:
'
\n
"
pbs
+=
"
echo
'
current working directory:
'
\n
"
pbs
+=
'
pwd
\n
'
pbs
+=
'
pwd
\n
'
pbs
+=
'
echo
"
START RUNNING JOBS IN find+xargs MODE
"
\n
'
pbs
+=
'
echo
"
START RUNNING JOBS IN find+xargs MODE
"
\n
'
pbs
+=
'
WINEARCH=
win32
WINEPREFIX=
~/.wine32
winefix
\n
'
pbs
+=
'
WINEARCH=
%s
WINEPREFIX=
%s
winefix
\n
'
%
wineparam
pbs
+=
'
# run all the PBS *.p files in find+xargs mode
\n
'
pbs
+=
'
# run all the PBS *.p files in find+xargs mode
\n
'
pbs
+=
'
echo
"
following cases will be run from following path:
"
\n
'
pbs
+=
'
echo
"
following cases will be run from following path:
"
\n
'
pbs
+=
'
echo
"
%s
"
\n
'
%
(
os
.
path
.
join
(
sim_id
,
pbs_in_base
))
pbs
+=
'
echo
"
%s
"
\n
'
%
(
os
.
path
.
join
(
sim_id
,
pbs_in_base
))
...
@@ -413,7 +418,7 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20, i0=0,
...
@@ -413,7 +418,7 @@ def create_chunks_htc_pbs(cases, sort_by_values=['[Windspeed]'], ppn=20, i0=0,
for
ii
,
dfi
in
enumerate
(
df_iter
):
for
ii
,
dfi
in
enumerate
(
df_iter
):
fname
,
ind
=
make_zip_chunks
(
dfi
,
i0
+
ii
,
sim_id
,
run_dir
,
model_zip
)
fname
,
ind
=
make_zip_chunks
(
dfi
,
i0
+
ii
,
sim_id
,
run_dir
,
model_zip
)
make_pbs_chunks
(
dfi
,
i0
+
ii
,
sim_id
,
run_dir
,
model_zip
,
make_pbs_chunks
(
dfi
,
i0
+
ii
,
sim_id
,
run_dir
,
model_zip
,
compress
=
compress
)
compress
=
compress
,
wine_64bit
=
wine_64bit
)
df_ind
=
df_ind
.
append
(
ind
)
df_ind
=
df_ind
.
append
(
ind
)
print
(
fname
)
print
(
fname
)
...
...
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